PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00136782001
Common NameGSBRNA2T00136782001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NF-YA
Protein Properties Length: 299aa    MW: 33096.7 Da    PI: 6.571
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00136782001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA35.43.5e-11166201138
            CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpy 38 
                          +ep++VN KQ+++I+ R+++Rakle ++kl +k+rk y
  GSBRNA2T00136782001 166 NEPVFVNVKQFHAIM-RKEQRAKLETQNKL-IKARKVY 201
                          59************9.6899**********.9***988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS511529.554165201IPR001289Nuclear transcription factor Y subunit A
PfamPF020456.5E-8167201IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MDKKDSFTTA HSTPPYLNTS ISWGLPTESN VQSYDVTESL SLKVHARSKH VLNPTKIDFQ  60
DKDSSSTQST DQSSTEVATS GDDDDDDNPS RQISFSAKPD SFEKTQRKGF PNNIKSGSSY  120
TTGTSDIHFA PGKSNFSCFG GYLPHATVWN PKMVGRVPLP LDFIDNEPVF VNVKQFHAIM  180
RKEQRAKLET QNKLIKARKV YHIFMNLDMF TLLNDLEDLK DTMGNMSGFV AHQLHASNDL  240
GCSTTSGSDI TSVSDGVRRC EFQLSDCPSQ TKPTMYIHGQ SNDMHGGGRN TDHFSVHI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00136782001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1728591e-135AC172859.1 Brassica rapa subsp. oleifera cultivar Inbred line 'Chiifu' clone KBrB023K01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013601803.11e-175PREDICTED: LOW QUALITY PROTEIN: nuclear transcription factor Y subunit A-8-like
SwissprotQ9LNP61e-104NFYA8_ARATH; Nuclear transcription factor Y subunit A-8
TrEMBLA0A078CYD10.0A0A078CYD1_BRANA; BnaC08g37640D protein
STRINGfgenesh2_kg.1__1922__AT1G17590.31e-112(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33492762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17590.41e-98nuclear factor Y, subunit A8
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]